SOCKET v2.11 02-11-00 John Walshaw, University of Sussex helix 0 (chain B) 41..104 cutoff 7.0 13 knobs, 13 type 0, 13 type 1, 13 type 2, 12 type 3, 12 type 4, 0 type 5, 0 type 6 THR 41:B Rd[3p] GLN 42:B Re[3p] ALA 43:B Rf[3p] ALA 44:B Rg[3p] ILE 45:B Ra[3p] T4 H 6: 66.145 ; hole (dgad) chain F: (0) THR 41 (1) ALA 44 (2) ILE 45 (3) ILE 48; sides 0-1: 5.208, 0-2: 5.968, 1-3: 6.173, 2-3: 5.587 ASP 46:B Rb[3p] GLN 47:B Rc[3p] ILE 48:B Rd[3p] T4 H 3: 37.816 ; hole (adea) chain D: (0) ILE 45 (1) ILE 48 (2) ASN 49 (3) LEU 52; sides 0-1: 6.227, 0-2: 7.106, 1-3: 7.309, 2-3: 5.797 ASN 49:B Re[3p] GLY 50:B Rf[3p] LYS 51:B Rg[3p] T4 H 3: 116.113 ; hole (eabe) chain D: (0) ASN 49 (1) LEU 52 (2) ASN 53 (3) ILE 56; sides 0-1: 5.797, 0-2: 5.617, 1-3: 5.793, 2-3: 5.454 LEU 52:B Ra[3p] T4 H 6: 63.488 ; hole (dgad) chain F: (0) ILE 48 (1) LYS 51 (2) LEU 52 (3) VAL 55; sides 0-1: 6.951, 0-2: 7.544, 1-3: 6.832, 2-3: 6.015 ASN 53:B Rb[3p] ARG 54:B Rc[3p] VAL 55:B Rd[3p] ILE 56:B Re[3p] GLU 57:B Rf[3p] LYS 58:B Rg[3p] THR 59:B Ra[3p] ASN 60:B Rb[3p] GLU 61:B Rc[3p] LYS 62:B Rd[3p] PHE 63:B Ra[3p] T4 H 6: 55.799 ; hole (adad) chain F: (0) THR 59 (1) LYS 62 (2) PHE 63 (3) ILE 66; sides 0-1: 8.426, 0-2: 5.128, 1-3: 5.236, 2-3: 5.886 HIS 64:B Rb[3p] GLN 65:B Rc[3p] ILE 66:B Rd[3p] GLU 67:B Re[3p] LYS 68:B Rf[3p] GLU 69:B Rg[3p] PHE 70:B Ra[3p] T4 H 6: 52.759 ; hole (dgad) chain F: (0) ILE 66 (1) GLU 69 (2) PHE 70 (3) VAL 73; sides 0-1: 7.247, 0-2: 6.383, 1-3: 6.616, 2-3: 6.488 SER 71:B Rb[3p] GLU 72:B Rc[3p] VAL 73:B Rd[3p] T4 H 3: 40.891 ; hole (adea) chain D: (0) PHE 70 (1) VAL 73 (2) GLU 74 (3) ILE 77; sides 0-1: 6.413, 0-2: 5.664, 1-3: 6.669, 2-3: 7.266 GLU 74:B Re[3p] GLY 75:B Rf[3p] ARG 76:B Rg[3p] T4 H 3: 123.126 ; hole (eabe) chain D: (0) GLU 74 (1) ILE 77 (2) GLN 78 (3) GLU 81; sides 0-1: 7.266, 0-2: 7.962, 1-3: 5.667, 2-3: 6.511 ILE 77:B Ra[3p] T4 H 6: 57.385 ; hole (dgad) chain F: (0) VAL 73 (1) ARG 76 (2) ILE 77 (3) LEU 80; sides 0-1: 7.400, 0-2: 6.218, 1-3: 9.100, 2-3: 7.011 GLN 78:B Rb[3p] ASP 79:B Rc[3p] LEU 80:B Rd[3p] T4 H 3: 38.776 ; hole (adea) chain D: (0) ILE 77 (1) LEU 80 (2) GLU 81 (3) VAL 84; sides 0-1: 6.916, 0-2: 5.667, 1-3: 6.016, 2-3: 7.681 GLU 81:B Re[3p] LYS 82:B Rf[3p] TYR 83:B Rg[3p] VAL 84:B Ra[3p] T4 H 6: 54.848 ; hole (dgad) chain F: (0) LEU 80 (1) TYR 83 (2) VAL 84 (3) THR 87; sides 0-1: 7.054, 0-2: 6.199, 1-3: 4.740, 2-3: 5.960 GLU 85:B Rb[3p] ASP 86:B Rc[3p] THR 87:B Rd[3p] LYS 88:B Re[3p] ILE 89:B Rf[3p] ASP 90:B Rg[3p] LEU 91:B Rd[3p] T4 H 3: 41.501 ; hole (edea) chain D: (0) LYS 88 (1) LEU 91 (2) TRP 92 (3) ASN 95; sides 0-1: 8.521, 0-2: 6.426, 1-3: 6.822, 2-3: 5.210 TRP 92:B Re[3p] SER 93:B Rf[3p] TYR 94:B Rg[3p] ASN 95:B Ra[3p] ALA 96:B GLU 97:B LEU 98:B LEU 99:B T2 H 1: 76.636 ; chain B: (0) MET 115 (1) LEU 118 (2) PHE 119 (3) THR 122; sides 0-1: 5.831, 0-2: 8.784, 1-3: 7.593, 2-3: 5.777 VAL 100:B ALA 101:B LEU 102:B GLU 103:B ASN 104:B helix 1 (chain B) 113..128 cutoff 7.0 2 knobs, 2 type 0, 2 type 1, 2 type 2, 0 type 3, 0 type 4, 0 type 5, 0 type 6 SER 113:B GLU 114:B MET 115:B ASN 116:B LYS 117:B LEU 118:B T2 H 6: 113.514 ; chain F: (0) TYR 94 (1) GLU 97 (2) LEU 98 (3) ALA 101; sides 0-1: 6.728, 0-2: 5.394, 1-3: 7.493, 2-3: 5.433 PHE 119:B GLU 120:B LYS 121:B THR 122:B T2 H 0: 77.284 ; hole (ea ) chain B: (0) TRP 92 (1) ASN 95 (2) ALA 96 (3) LEU 99; sides 0-1: 5.312, 0-2: 7.986, 1-3: 7.335, 2-3: 6.109 ARG 123:B ARG 124:B GLN 125:B LEU 126:B ARG 127:B GLU 128:B helix 2 (chain B) 146..151 cutoff 7.0 0 knobs, 0 type 0, 0 type 1, 0 type 2, 0 type 3, 0 type 4, 0 type 5, 0 type 6 ASN 146:B ALA 147:B CYS 148:B ILE 149:B GLU 150:B SER 151:B helix 3 (chain D) 41..101 cutoff 7.0 13 knobs, 13 type 0, 13 type 1, 13 type 2, 11 type 3, 11 type 4, 0 type 5, 0 type 6 THR 41:D Rd[3p] GLN 42:D Re[3p] ALA 43:D Rf[3p] ALA 44:D Rg[3p] ILE 45:D Ra[3p] T4 H 0: 60.062 ; hole (dgad) chain B: (0) THR 41 (1) ALA 44 (2) ILE 45 (3) ILE 48; sides 0-1: 5.388, 0-2: 5.918, 1-3: 6.179, 2-3: 6.340 ASP 46:D Rb[3p] GLN 47:D Rc[3p] ILE 48:D Rd[3p] T4 H 6: 41.877 ; hole (adea) chain F: (0) ILE 45 (1) ILE 48 (2) ASN 49 (3) LEU 52; sides 0-1: 5.587, 0-2: 6.185, 1-3: 7.544, 2-3: 5.972 ASN 49:D Re[3p] GLY 50:D Rf[3p] LYS 51:D Rg[3p] T4 H 6: 119.256 ; hole (eabe) chain F: (0) ASN 49 (1) LEU 52 (2) ASN 53 (3) ILE 56; sides 0-1: 5.972, 0-2: 6.205, 1-3: 5.656, 2-3: 5.233 LEU 52:D Ra[3p] T4 H 0: 57.842 ; hole (dgad) chain B: (0) ILE 48 (1) LYS 51 (2) LEU 52 (3) VAL 55; sides 0-1: 6.845, 0-2: 7.039, 1-3: 6.718, 2-3: 6.146 ASN 53:D Rb[3p] ARG 54:D Rc[3p] VAL 55:D Rd[3p] T2 H 6: 42.484 ; hole (adea) chain F: (0) LEU 52 (1) VAL 55 (2) ILE 56 (3) THR 59; sides 0-1: 6.015, 0-2: 5.656, 1-3: 5.973, 2-3: 6.316 ILE 56:D Re[3p] GLU 57:D Rf[3p] LYS 58:D Rg[3p] THR 59:D Ra[3p] ASN 60:D Rb[3p] GLU 61:D Rc[3p] LYS 62:D Rd[3p] PHE 63:D Ra[3p] T4 H 0: 60.621 ; hole (adad) chain B: (0) THR 59 (1) LYS 62 (2) PHE 63 (3) ILE 66; sides 0-1: 8.297, 0-2: 5.598, 1-3: 5.320, 2-3: 6.078 HIS 64:D Rb[3p] GLN 65:D Rc[3p] ILE 66:D Rd[3p] GLU 67:D Re[3p] LYS 68:D Rf[3p] GLU 69:D Rg[3p] PHE 70:D Ra[3p] T4 H 0: 55.179 ; hole (dgad) chain B: (0) ILE 66 (1) GLU 69 (2) PHE 70 (3) VAL 73; sides 0-1: 7.151, 0-2: 6.282, 1-3: 6.520, 2-3: 6.502 SER 71:D Rb[3p] GLU 72:D Rc[3p] VAL 73:D Rd[3p] T4 H 6: 35.376 ; hole (adea) chain F: (0) PHE 70 (1) VAL 73 (2) GLU 74 (3) ILE 77; sides 0-1: 6.488, 0-2: 5.729, 1-3: 6.218, 2-3: 7.130 GLU 74:D Re[3p] GLY 75:D Rf[3p] ARG 76:D Rg[3p] ILE 77:D Ra[3p] T4 H 0: 62.530 ; hole (dgad) chain B: (0) VAL 73 (1) ARG 76 (2) ILE 77 (3) LEU 80; sides 0-1: 6.639, 0-2: 6.262, 1-3: 7.660, 2-3: 7.001 GLN 78:D Rb[3p] ASP 79:D Rc[3p] LEU 80:D Rd[3p] T4 H 6: 44.847 ; hole (adea) chain F: (0) ILE 77 (1) LEU 80 (2) GLU 81 (3) VAL 84; sides 0-1: 7.011, 0-2: 5.989, 1-3: 6.199, 2-3: 7.605 GLU 81:D Re[3p] LYS 82:D Rf[3p] TYR 83:D Rg[3p] VAL 84:D Ra[3p] T4 H 0: 49.706 ; hole (dgad) chain B: (0) LEU 80 (1) TYR 83 (2) VAL 84 (3) THR 87; sides 0-1: 7.003, 0-2: 5.973, 1-3: 4.930, 2-3: 5.681 GLU 85:D Rb[3p] ASP 86:D Rc[3p] THR 87:D Rd[3p] LYS 88:D Re[3p] ILE 89:D Rf[3p] ASP 90:D Rg[3p] LEU 91:D Rd[3p] T4 H 6: 44.606 ; hole (edea) chain F: (0) LYS 88 (1) LEU 91 (2) TRP 92 (3) ASN 95; sides 0-1: 8.460, 0-2: 6.617, 1-3: 6.861, 2-3: 4.811 TRP 92:D Re[3p] SER 93:D Rf[3p] TYR 94:D Rg[3p] ASN 95:D Ra[3p] ALA 96:D GLU 97:D LEU 98:D LEU 99:D T2 H 4: 82.982 ; chain D: (0) MET 115 (1) LEU 118 (2) PHE 119 (3) THR 122; sides 0-1: 5.543, 0-2: 9.175, 1-3: 7.467, 2-3: 5.874 VAL 100:D ALA 101:D helix 4 (chain D) 113..129 cutoff 7.0 2 knobs, 2 type 0, 2 type 1, 2 type 2, 0 type 3, 0 type 4, 0 type 5, 0 type 6 SER 113:D GLU 114:D MET 115:D ASN 116:D LYS 117:D LEU 118:D T2 H 0: 124.970 ; chain B: (0) TYR 94 (1) GLU 97 (2) LEU 98 (3) ALA 101; sides 0-1: 6.310, 0-2: 5.519, 1-3: 7.703, 2-3: 5.469 PHE 119:D GLU 120:D LYS 121:D THR 122:D T2 H 3: 77.104 ; hole (ea ) chain D: (0) TRP 92 (1) ASN 95 (2) ALA 96 (3) LEU 99; sides 0-1: 5.210, 0-2: 8.015, 1-3: 7.527, 2-3: 6.420 ARG 123:D ARG 124:D GLN 125:D LEU 126:D ARG 127:D GLU 128:D ASN 129:D helix 5 (chain D) 146..153 cutoff 7.0 1 knobs, 1 type 0, 1 type 1, 1 type 2, 0 type 3, 0 type 4, 0 type 5, 0 type 6 ASN 146:D ALA 147:D CYS 148:D ILE 149:D GLU 150:D SER 151:D ILE 152:D T2 H 3: 109.910 ; hole (gcdg) chain D: (0) ARG 76 (1) ASP 79 (2) LEU 80 (3) TYR 83; sides 0-1: 6.688, 0-2: 8.562, 1-3: 9.610, 2-3: 7.099 ARG 153:D helix 6 (chain F) 41..104 cutoff 7.0 13 knobs, 13 type 0, 13 type 1, 13 type 2, 11 type 3, 11 type 4, 0 type 5, 0 type 6 THR 41:F Rd[3p] GLN 42:F Re[3p] ALA 43:F Rf[3p] ALA 44:F Rg[3p] ILE 45:F Ra[3p] T4 H 3: 57.861 ; hole (dgad) chain D: (0) THR 41 (1) ALA 44 (2) ILE 45 (3) ILE 48; sides 0-1: 5.323, 0-2: 5.793, 1-3: 6.239, 2-3: 6.227 ASP 46:F Rb[3p] GLN 47:F Rc[3p] ILE 48:F Rd[3p] T4 H 0: 35.969 ; hole (adea) chain B: (0) ILE 45 (1) ILE 48 (2) ASN 49 (3) LEU 52; sides 0-1: 6.340, 0-2: 6.382, 1-3: 7.039, 2-3: 6.204 ASN 49:F Re[3p] GLY 50:F Rf[3p] LYS 51:F Rg[3p] T4 H 0: 115.517 ; hole (eabe) chain B: (0) ASN 49 (1) LEU 52 (2) ASN 53 (3) ILE 56; sides 0-1: 6.204, 0-2: 6.507, 1-3: 6.359, 2-3: 5.551 LEU 52:F Ra[3p] T4 H 3: 57.892 ; hole (dgad) chain D: (0) ILE 48 (1) LYS 51 (2) LEU 52 (3) VAL 55; sides 0-1: 6.729, 0-2: 7.309, 1-3: 6.569, 2-3: 5.952 ASN 53:F Rb[3p] ARG 54:F Rc[3p] VAL 55:F Rd[3p] T2 H 0: 39.588 ; hole (adea) chain B: (0) LEU 52 (1) VAL 55 (2) ILE 56 (3) THR 59; sides 0-1: 6.146, 0-2: 6.359, 1-3: 5.574, 2-3: 6.142 ILE 56:F Re[3p] GLU 57:F Rf[3p] LYS 58:F Rg[3p] THR 59:F Ra[3p] ASN 60:F Rb[3p] GLU 61:F Rc[3p] LYS 62:F Rd[3p] PHE 63:F Ra[3p] T4 H 3: 58.901 ; hole (adad) chain D: (0) THR 59 (1) LYS 62 (2) PHE 63 (3) ILE 66; sides 0-1: 7.947, 0-2: 5.573, 1-3: 5.182, 2-3: 6.065 HIS 64:F Rb[3p] GLN 65:F Rc[3p] ILE 66:F Rd[3p] GLU 67:F Re[3p] LYS 68:F Rf[3p] GLU 69:F Rg[3p] PHE 70:F Ra[3p] T4 H 3: 53.066 ; hole (dgad) chain D: (0) ILE 66 (1) GLU 69 (2) PHE 70 (3) VAL 73; sides 0-1: 6.967, 0-2: 6.251, 1-3: 6.794, 2-3: 6.413 SER 71:F Rb[3p] GLU 72:F Rc[3p] VAL 73:F Rd[3p] T4 H 0: 36.265 ; hole (adea) chain B: (0) PHE 70 (1) VAL 73 (2) GLU 74 (3) ILE 77; sides 0-1: 6.502, 0-2: 5.905, 1-3: 6.262, 2-3: 6.980 GLU 74:F Re[3p] GLY 75:F Rf[3p] ARG 76:F Rg[3p] ILE 77:F Ra[3p] T4 H 3: 59.411 ; hole (dgad) chain D: (0) VAL 73 (1) ARG 76 (2) ILE 77 (3) LEU 80; sides 0-1: 7.124, 0-2: 6.669, 1-3: 8.562, 2-3: 6.916 GLN 78:F Rb[3p] ASP 79:F Rc[3p] LEU 80:F Rd[3p] T4 H 0: 34.101 ; hole (adea) chain B: (0) ILE 77 (1) LEU 80 (2) GLU 81 (3) VAL 84; sides 0-1: 7.001, 0-2: 5.821, 1-3: 5.973, 2-3: 7.523 GLU 81:F Re[3p] LYS 82:F Rf[3p] TYR 83:F Rg[3p] VAL 84:F Ra[3p] T4 H 3: 59.979 ; hole (dgad) chain D: (0) LEU 80 (1) TYR 83 (2) VAL 84 (3) THR 87; sides 0-1: 7.099, 0-2: 6.016, 1-3: 4.843, 2-3: 5.935 GLU 85:F Rb[3p] ASP 86:F Rc[3p] THR 87:F Rd[3p] LYS 88:F Re[3p] ILE 89:F Rf[3p] ASP 90:F Rg[3p] LEU 91:F Rd[3p] T4 H 0: 44.415 ; hole (edea) chain B: (0) LYS 88 (1) LEU 91 (2) TRP 92 (3) ASN 95; sides 0-1: 8.510, 0-2: 6.415, 1-3: 6.800, 2-3: 5.312 TRP 92:F Re[3p] SER 93:F Rf[3p] TYR 94:F Rg[3p] ASN 95:F Ra[3p] ALA 96:F GLU 97:F LEU 98:F LEU 99:F T2 H 7: 88.881 ; chain F: (0) MET 115 (1) LEU 118 (2) PHE 119 (3) THR 122; sides 0-1: 5.138, 0-2: 9.253, 1-3: 7.567, 2-3: 5.907 VAL 100:F ALA 101:F LEU 102:F GLU 103:F ASN 104:F helix 7 (chain F) 113..126 cutoff 7.0 2 knobs, 2 type 0, 2 type 1, 2 type 2, 0 type 3, 0 type 4, 0 type 5, 0 type 6 SER 113:F GLU 114:F MET 115:F ASN 116:F LYS 117:F LEU 118:F T2 H 3: 128.180 ; chain D: (0) TYR 94 (1) GLU 97 (2) LEU 98 (3) ALA 101; sides 0-1: 6.469, 0-2: 5.433, 1-3: 7.748, 2-3: 6.270 PHE 119:F GLU 120:F LYS 121:F THR 122:F T2 H 6: 87.099 ; hole (ea ) chain F: (0) TRP 92 (1) ASN 95 (2) ALA 96 (3) LEU 99; sides 0-1: 4.811, 0-2: 8.032, 1-3: 7.299, 2-3: 6.050 ARG 123:F ARG 124:F GLN 125:F LEU 126:F helix 8 (chain F) 146..154 cutoff 7.0 0 knobs, 0 type 0, 0 type 1, 0 type 2, 0 type 3, 0 type 4, 0 type 5, 0 type 6 ASN 146:F ALA 147:F CYS 148:F ILE 149:F GLU 150:F SER 151:F ILE 152:F ARG 153:F ASN 154:F